HL_6QDW_060

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6QDW|1|b|A|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_060 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0778

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6QDW|1|b|U|2408
6QDW|1|b|G|2409
6QDW|1|b|A|2410
6QDW|1|b|A|2411
6QDW|1|b|U|2412
6QDW|1|b|G|2413
6QDW|1|b|G|2414
6QDW|1|b|A|2415
6QDW|1|b|A|2416
6QDW|1|b|G|2417

Current chains

Chain b

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15