3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6QDW|1|b|G|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QDW_067 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.0901
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6QDW|1|b|C|2749
6QDW|1|b|U|2750
6QDW|1|b|G|2751
6QDW|1|b|A|2752
6QDW|1|b|A|2753
6QDW|1|b|A|2754
6QDW|1|b|G|2755
6QDW|1|b|C|2756
6QDW|1|b|A|2757
6QDW|1|b|U|2758
6QDW|1|b|C|2759
6QDW|1|b|U|2760
6QDW|1|b|A|2761
6QDW|1|b|A|2762
6QDW|1|b|G|2763

Current chains

Chain b
23S rRNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain g
50S ribosomal protein L6
Chain j
50S ribosomal protein L13

Coloring options:


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