HL_6QDW_067

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6QDW|1|b|G|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_067 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0901

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6QDW|1|b|C|2749
6QDW|1|b|U|2750
6QDW|1|b|G|2751
6QDW|1|b|A|2752
6QDW|1|b|A|2753
6QDW|1|b|A|2754
6QDW|1|b|G|2755
6QDW|1|b|C|2756
6QDW|1|b|A|2757
6QDW|1|b|U|2758
6QDW|1|b|C|2759
6QDW|1|b|U|2760
6QDW|1|b|A|2761
6QDW|1|b|A|2762
6QDW|1|b|G|2763

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain j

50S ribosomal protein L13