HL_6QIK_020
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 6QIK|1|A|U|879, 6QIK|1|A|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QIK_020 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.113
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6QIK|1|A|A|876
6QIK|1|A|C|877
6QIK|1|A|G|878
6QIK|1|A|U|879
6QIK|1|A|G|880
6QIK|1|A|C|881
6QIK|1|A|A|882
6QIK|1|A|A|883
6QIK|1|A|A|884
6QIK|1|A|U|885
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L3
- Chain U
- 60S ribosomal protein L17-A
- Chain i
- 60S ribosomal protein L37-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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