HL_6QIK_023

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6QIK|1|A|A|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QIK_023 not in the Motif Atlas

Geometric match to HL_4KJI_001

Geometric discrepancy: 0.3671

The information below is about HL_4KJI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14333.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6QIK|1|A|C|1023
6QIK|1|A|G|1024
6QIK|1|A|A|1025
6QIK|1|A|A|1026
6QIK|1|A|A|1027
6QIK|1|A|U|1028
6QIK|1|A|G|1029

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain w

60S ribosomal export protein NMD3