HL_6QIK_062

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6QIK|1|A|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QIK_062 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1471

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6QIK|1|A|A|2897
6QIK|1|A|G|2898
6QIK|1|A|C|2899
6QIK|1|A|A|2900
6QIK|1|A|G|2901
6QIK|1|A|A|2902
6QIK|1|A|A|2903
6QIK|1|A|U|2904

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain t

Ubiquitin-60S ribosomal protein L40