HL_6QNQ_201

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6QNQ|1|1H|G|2751, 6QNQ|1|1H|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_201 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1049

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6QNQ|1|1H|C|2745
6QNQ|1|1H|U|2746
6QNQ|1|1H|G|2747
6QNQ|1|1H|A|2748
6QNQ|1|1H|A|2749
6QNQ|1|1H|A|2750
6QNQ|1|1H|G|2751
6QNQ|1|1H|C|2752
6QNQ|1|1H|A|2753
6QNQ|1|1H|U|2754
6QNQ|1|1H|C|2755
6QNQ|1|1H|U|2756
6QNQ|1|1H|A|2757
6QNQ|1|1H|A|2758
6QNQ|1|1H|G|2759

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13