3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6QNQ|1|1H|G|2751, 6QNQ|1|1H|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QNQ_201 not in the Motif Atlas
Homologous match to HL_7RQB_066
Geometric discrepancy: 0.1049
The information below is about HL_7RQB_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.7
Basepair signature
cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
8

Unit IDs

6QNQ|1|1H|C|2745
6QNQ|1|1H|U|2746
6QNQ|1|1H|G|2747
6QNQ|1|1H|A|2748
6QNQ|1|1H|A|2749
6QNQ|1|1H|A|2750
6QNQ|1|1H|G|2751
6QNQ|1|1H|C|2752
6QNQ|1|1H|A|2753
6QNQ|1|1H|U|2754
6QNQ|1|1H|C|2755
6QNQ|1|1H|U|2756
6QNQ|1|1H|A|2757
6QNQ|1|1H|A|2758
6QNQ|1|1H|G|2759

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 51
50S ribosomal protein L6
Chain 58
50S ribosomal protein L13

Coloring options:


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