HL_6QNQ_210
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 6QNQ|1|2K|G|19, 6QNQ|1|2K|G|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QNQ_210 not in the Motif Atlas
- Homologous match to HL_5E81_211
- Geometric discrepancy: 0.1077
- The information below is about HL_5E81_211
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6QNQ|1|2K|C|13
6QNQ|1|2K|A|14
6QNQ|1|2K|G|15
6QNQ|1|2K|C|16
6QNQ|1|2K|C|17
6QNQ|1|2K|U|18
6QNQ|1|2K|G|19
6QNQ|1|2K|G|20
6QNQ|1|2K|H2U|21
6QNQ|1|2K|A|22
6QNQ|1|2K|G|23
Current chains
- Chain 2K
- E. coli tRNAfMet
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 41
- 50S ribosomal protein L5
Coloring options: