HL_6QNQ_213
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 6QNQ|1|2L|C|16, 6QNQ|1|2L|G|19, 6QNQ|1|2L|G|20, 6QNQ|1|2L|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QNQ_213 not in the Motif Atlas
- Homologous match to HL_5E81_211
- Geometric discrepancy: 0.2106
- The information below is about HL_5E81_211
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6QNQ|1|2L|C|13
6QNQ|1|2L|A|14
6QNQ|1|2L|G|15
6QNQ|1|2L|C|16
6QNQ|1|2L|C|17
6QNQ|1|2L|U|18
6QNQ|1|2L|G|19
6QNQ|1|2L|G|20
6QNQ|1|2L|U|21
6QNQ|1|2L|A|22
6QNQ|1|2L|G|23
Current chains
- Chain 2L
- E. coli tRNAfMet
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 49
- 50S ribosomal protein L5
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