HL_6QNR_128

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNR_128 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2979

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6QNR|1|1G|G|1133
6QNR|1|1G|G|1134
6QNR|1|1G|U|1135
6QNR|1|1G|U|1136
6QNR|1|1G|C|1137
6QNR|1|1G|G|1138
6QNR|1|1G|G|1139
6QNR|1|1G|C|1140
6QNR|1|1G|C|1141

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 82

30S ribosomal protein S9