HL_6QNR_239

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(PSU)AAC(5MU)A(PSU)AA(OMC)

Length

11 nucleotides

Bulged bases

6QNR|1|14|A|1913

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNR_239 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.4442

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6QNR|1|14|G|1910
6QNR|1|14|PSU|1911
6QNR|1|14|A|1912
6QNR|1|14|A|1913
6QNR|1|14|C|1914
6QNR|1|14|5MU|1915
6QNR|1|14|A|1916
6QNR|1|14|PSU|1917
6QNR|1|14|A|1918
6QNR|1|14|A|1919
6QNR|1|14|OMC|1920

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 1L

Transfer RNA; tRNA

Chain 2L

Transfer RNA; tRNA

Chain 4L

mRNA