HL_6QT0_007
3D structure
- PDB id
- 6QT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 6QT0|1|A|G|218, 6QT0|1|A|A|219, 6QT0|1|A|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QT0_007 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1064
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
6QT0|1|A|G|216
6QT0|1|A|U|217
6QT0|1|A|G|218
6QT0|1|A|A|219
6QT0|1|A|G|220
6QT0|1|A|A|221
6QT0|1|A|A|222
6QT0|1|A|U|223
6QT0|1|A|C|224
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain X
- 60S ribosomal protein L26-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: