HL_6QT0_022

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6QT0|1|A|C|959, 6QT0|1|A|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_022 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.1443

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6QT0|1|A|C|958
6QT0|1|A|C|959
6QT0|1|A|U|960
6QT0|1|A|C|961
6QT0|1|A|A|962
6QT0|1|A|G|963

Current chains

Chain A

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L28

Chain a

60S ribosomal protein L29

Chain l

60S ribosomal protein L42-A