HL_6QT0_031

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAUGAGAACUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_031 not in the Motif Atlas

Geometric match to HL_4WSM_226

Geometric discrepancy: 0.3891

The information below is about HL_4WSM_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6QT0|1|A|A|1461
6QT0|1|A|A|1462
6QT0|1|A|U|1463
6QT0|1|A|G|1464
6QT0|1|A|A|1465
6QT0|1|A|G|1466
6QT0|1|A|A|1467
6QT0|1|A|A|1468
6QT0|1|A|C|1469
6QT0|1|A|U|1470
6QT0|1|A|U|1471

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A