HL_6QTZ_044

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGGUCG

Length

7 nucleotides

Bulged bases

6QTZ|1|A|G|1954, 6QTZ|1|A|U|1955

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QTZ_044 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.327

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6QTZ|1|A|C|1951
6QTZ|1|A|G|1952
6QTZ|1|A|G|1953
6QTZ|1|A|G|1954
6QTZ|1|A|U|1955
6QTZ|1|A|C|2094
6QTZ|1|A|G|2095

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A