HL_6QTZ_051

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6QTZ|1|A|A|2372, 6QTZ|1|A|A|2373, 6QTZ|1|A|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QTZ_051 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1406

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6QTZ|1|A|G|2369
6QTZ|1|A|G|2370
6QTZ|1|A|G|2371
6QTZ|1|A|A|2372
6QTZ|1|A|A|2373
6QTZ|1|A|C|2374
6QTZ|1|A|G|2375
6QTZ|1|A|G|2376
6QTZ|1|A|G|2377
6QTZ|1|A|C|2378

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain e

60S ribosomal protein L32