3D structure

PDB id
6QUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QUL_032 not in the Motif Atlas
Homologous match to HL_5J7L_167
Geometric discrepancy: 0.0893
The information below is about HL_5J7L_167
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6QUL|1|A|C|1363
6QUL|1|A|G|1364
6QUL|1|A|A|1365
6QUL|1|A|A|1366
6QUL|1|A|A|1367
6QUL|1|A|G|1368

Current chains

Chain A
23S rRNA

Nearby chains

Chain Y
50S ribosomal protein L28
Chain d
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.31 s
Application loaded.