HL_6QZP_024

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6QZP|1|L5|U|1596, 6QZP|1|L5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_024 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0813

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6QZP|1|L5|A|1593
6QZP|1|L5|C|1594
6QZP|1|L5|G|1595
6QZP|1|L5|U|1596
6QZP|1|L5|G|1597
6QZP|1|L5|C|1598
6QZP|1|L5|A|1599
6QZP|1|L5|A|1600
6QZP|1|L5|A|1601
6QZP|1|L5|U|1602

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37