HL_6QZP_050

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6QZP|1|L5|A|3642, 6QZP|1|L5|A|3643, 6QZP|1|L5|U|3644, 6QZP|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_050 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.2004

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6QZP|1|L5|U|3639
6QZP|1|L5|U|3640
6QZP|1|L5|U|3641
6QZP|1|L5|A|3642
6QZP|1|L5|A|3643
6QZP|1|L5|U|3644
6QZP|1|L5|U|3645
6QZP|1|L5|A|3646
6QZP|1|L5|A|3647
6QZP|1|L5|A|3648
6QZP|1|L5|A|3649

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37