HL_6QZP_053

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUAAC(B8H)A(PSU)GACU

Length

13 nucleotides

Bulged bases

6QZP|1|L5|A|3760, 6QZP|1|L5|C|3761, 6QZP|1|L5|A|3763

QA status

Modified nucleotides: B8H, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_053 not in the Motif Atlas

Homologous match to HL_8P9A_160

Geometric discrepancy: 0.3961

The information below is about HL_8P9A_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70658.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6QZP|1|L5|A|3756
6QZP|1|L5|G|3757
6QZP|1|L5|U|3758
6QZP|1|L5|A|3759
6QZP|1|L5|A|3760
6QZP|1|L5|C|3761
6QZP|1|L5|B8H|3762
6QZP|1|L5|A|3763
6QZP|1|L5|PSU|3764
6QZP|1|L5|G|3765
6QZP|1|L5|A|3766
6QZP|1|L5|C|3767
6QZP|1|L5|U|3768

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA