HL_6QZP_059

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

6QZP|1|L5|A|4214, 6QZP|1|L5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_059 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1069

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6QZP|1|L5|U|4210
6QZP|1|L5|C|4211
6QZP|1|L5|A|4212
6QZP|1|L5|A|4213
6QZP|1|L5|A|4214
6QZP|1|L5|C|4215
6QZP|1|L5|G|4216
6QZP|1|L5|G|4217
6QZP|1|L5|U|4218
6QZP|1|L5|A|4219
6QZP|1|L5|6MZ|4220
6QZP|1|L5|C|4221
6QZP|1|L5|G|4222

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29