HL_6R5Q_069

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6R5Q|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_069 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1351

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6R5Q|1|5|A|4474
6R5Q|1|5|G|4475
6R5Q|1|5|C|4476
6R5Q|1|5|A|4477
6R5Q|1|5|G|4478
6R5Q|1|5|A|4479
6R5Q|1|5|A|4480
6R5Q|1|5|U|4481

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain m

eL40