HL_6R5Q_101

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6R5Q|1|K|U|887, 6R5Q|1|K|U|889, 6R5Q|1|K|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_101 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4795

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6R5Q|1|K|U|885
6R5Q|1|K|A|886
6R5Q|1|K|U|887
6R5Q|1|K|U|888
6R5Q|1|K|U|889
6R5Q|1|K|U|890
6R5Q|1|K|G|891
6R5Q|1|K|U|892
6R5Q|1|K|U|893
6R5Q|1|K|G|894
6R5Q|1|K|G|895
6R5Q|1|K|U|896
6R5Q|1|K|U|897
6R5Q|1|K|U|898
6R5Q|1|K|U|899
6R5Q|1|K|C|900
6R5Q|1|K|G|901

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain z

40S ribosomal protein S6