HL_6R6G_054
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6R6G|1|5|A|2340, 6R6G|1|5|A|2341, 6R6G|1|5|U|2342, 6R6G|1|5|U|2343, 6R6G|1|5|A|2346
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6G_054 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.1981
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6R6G|1|5|U|2337
6R6G|1|5|U|2338
6R6G|1|5|U|2339
6R6G|1|5|A|2340
6R6G|1|5|A|2341
6R6G|1|5|U|2342
6R6G|1|5|U|2343
6R6G|1|5|A|2344
6R6G|1|5|A|2345
6R6G|1|5|A|2346
6R6G|1|5|A|2347
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 1
- X-box-binding protein 1
- Chain A
- uL2
- Chain j
- Ribosomal protein L37
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