HL_6R6G_058

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6R6G|1|5|U|2500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_058 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6R6G|1|5|U|2494
6R6G|1|5|C|2495
6R6G|1|5|U|2496
6R6G|1|5|A|2497
6R6G|1|5|A|2498
6R6G|1|5|U|2499
6R6G|1|5|U|2500
6R6G|1|5|A|2501
6R6G|1|5|G|2502

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

Small subunit ribosomal RNA; SSU rRNA

Chain V

eL14