HL_6R6G_068

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6R6G|1|5|G|3045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_068 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1429

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6R6G|1|5|A|3044
6R6G|1|5|G|3045
6R6G|1|5|C|3046
6R6G|1|5|A|3047
6R6G|1|5|G|3048
6R6G|1|5|A|3049
6R6G|1|5|A|3050
6R6G|1|5|U|3051

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain m

60S ribosomal protein L40