3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAGCUACUCG
Length
10 nucleotides
Bulged bases
6R6G|1|AF|A|36, 6R6G|1|AF|U|38, 6R6G|1|AF|C|39
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6R6G_085 not in the Motif Atlas
Geometric match to HL_1E8O_002
Geometric discrepancy: 0.3007
The information below is about HL_1E8O_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_73255.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6R6G|1|AF|C|31
6R6G|1|AF|A|32
6R6G|1|AF|G|33
6R6G|1|AF|C|34
6R6G|1|AF|U|35
6R6G|1|AF|A|36
6R6G|1|AF|C|37
6R6G|1|AF|U|38
6R6G|1|AF|C|39
6R6G|1|AF|G|40

Current chains

Chain AF
7S RNA

Nearby chains

Chain s
60S acidic ribosomal protein P0
Chain t
uL11

Coloring options:


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