HL_6R6G_092

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6R6G|1|K|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_092 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.2679

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6R6G|1|K|G|288
6R6G|1|K|G|289
6R6G|1|K|U|290
6R6G|1|K|G|291
6R6G|1|K|A|292
6R6G|1|K|C|293
6R6G|1|K|U|294
6R6G|1|K|C|295

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain EE

Ribosomal protein S11

Chain x

40S ribosomal protein S4

Chain z

40S ribosomal protein S6