HL_6R6G_104
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- 6R6G|1|K|U|887, 6R6G|1|K|U|889, 6R6G|1|K|U|890
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6G_104 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.4898
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6R6G|1|K|U|885
6R6G|1|K|A|886
6R6G|1|K|U|887
6R6G|1|K|U|888
6R6G|1|K|U|889
6R6G|1|K|U|890
6R6G|1|K|G|891
6R6G|1|K|U|892
6R6G|1|K|U|893
6R6G|1|K|G|894
6R6G|1|K|G|895
6R6G|1|K|U|896
6R6G|1|K|U|897
6R6G|1|K|U|898
6R6G|1|K|U|899
6R6G|1|K|C|900
6R6G|1|K|G|901
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain z
- 40S ribosomal protein S6
Coloring options: