HL_6R6P_025
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCGCGCC
- Length
- 8 nucleotides
- Bulged bases
- 6R6P|1|5|C|1481, 6R6P|1|5|G|1482, 6R6P|1|5|C|1485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6P_025 not in the Motif Atlas
- Geometric match to HL_6VMY_004
- Geometric discrepancy: 0.3341
- The information below is about HL_6VMY_004
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_51020.2
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 14
Unit IDs
6R6P|1|5|G|1479
6R6P|1|5|C|1480
6R6P|1|5|C|1481
6R6P|1|5|G|1482
6R6P|1|5|C|1483
6R6P|1|5|G|1484
6R6P|1|5|C|1485
6R6P|1|5|C|1486
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain i
- 60S ribosomal protein L36
Coloring options: