HL_6R6P_028

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6R6P|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_028 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1439

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6R6P|1|5|G|1627
6R6P|1|5|C|1628
6R6P|1|5|G|1629
6R6P|1|5|A|1630
6R6P|1|5|A|1631
6R6P|1|5|A|1632
6R6P|1|5|G|1633
6R6P|1|5|A|1634
6R6P|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37