HL_6R6P_035

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

6R6P|1|5|U|2008

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_035 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.5215

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6R6P|1|5|U|2006
6R6P|1|5|G|2007
6R6P|1|5|U|2008
6R6P|1|5|A|2009
6R6P|1|5|A|2010
6R6P|1|5|C|2011
6R6P|1|5|A|2012
6R6P|1|5|A|2013

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain m

eL40

Chain t

Ribosomal protein L12