HL_6R6P_064

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6R6P|1|5|A|4214, 6R6P|1|5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_064 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1345

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6R6P|1|5|U|4210
6R6P|1|5|C|4211
6R6P|1|5|A|4212
6R6P|1|5|A|4213
6R6P|1|5|A|4214
6R6P|1|5|C|4215
6R6P|1|5|G|4216
6R6P|1|5|G|4217
6R6P|1|5|U|4218
6R6P|1|5|A|4219
6R6P|1|5|A|4220
6R6P|1|5|C|4221
6R6P|1|5|G|4222

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain T

eL21

Chain b

60S ribosomal protein L29