HL_6R6P_102

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6R6P|1|K|U|890, 6R6P|1|K|U|898

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_102 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.5494

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6R6P|1|K|U|885
6R6P|1|K|A|886
6R6P|1|K|U|887
6R6P|1|K|U|888
6R6P|1|K|U|889
6R6P|1|K|U|890
6R6P|1|K|G|891
6R6P|1|K|U|892
6R6P|1|K|U|893
6R6P|1|K|G|894
6R6P|1|K|G|895
6R6P|1|K|U|896
6R6P|1|K|U|897
6R6P|1|K|U|898
6R6P|1|K|U|899
6R6P|1|K|C|900
6R6P|1|K|G|901

Current chains

Chain K

18S rRNA

Nearby chains

Chain EE

Ribosomal protein S11

Chain z

40S ribosomal protein S6