HL_6R6P_109
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6R6P|1|K|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6P_109 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.141
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6R6P|1|K|G|1245
6R6P|1|K|A|1246
6R6P|1|K|C|1247
6R6P|1|K|U|1248
6R6P|1|K|C|1249
6R6P|1|K|A|1250
6R6P|1|K|A|1251
6R6P|1|K|C|1252
6R6P|1|K|A|1253
6R6P|1|K|C|1254
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain GG
- uS10
- Chain UU
- Ribosomal protein S16
- Chain w
- S29
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