HL_6R7Q_031

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

6R7Q|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R7Q_031 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3382

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6R7Q|1|5|C|1816
6R7Q|1|5|U|1817
6R7Q|1|5|G|1818
6R7Q|1|5|G|1819
6R7Q|1|5|U|1820
6R7Q|1|5|G|1821
6R7Q|1|5|U|1822
6R7Q|1|5|G|1823

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

eL21

Chain b

eL29