HL_6R7Q_054
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6R7Q|1|5|A|3642, 6R7Q|1|5|A|3643, 6R7Q|1|5|U|3644, 6R7Q|1|5|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R7Q_054 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.1872
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6R7Q|1|5|U|3639
6R7Q|1|5|U|3640
6R7Q|1|5|U|3641
6R7Q|1|5|A|3642
6R7Q|1|5|A|3643
6R7Q|1|5|U|3644
6R7Q|1|5|U|3645
6R7Q|1|5|A|3646
6R7Q|1|5|A|3647
6R7Q|1|5|A|3648
6R7Q|1|5|A|3649
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 1
- X-box-binding protein 1
- Chain A
- uL2
- Chain j
- Ribosomal protein L37
Coloring options: