HL_6R7Q_108

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6R7Q|1|K|U|1300, 6R7Q|1|K|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R7Q_108 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2591

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6R7Q|1|K|A|1295
6R7Q|1|K|U|1296
6R7Q|1|K|U|1297
6R7Q|1|K|G|1298
6R7Q|1|K|A|1299
6R7Q|1|K|U|1300
6R7Q|1|K|A|1301
6R7Q|1|K|G|1302
6R7Q|1|K|C|1303
6R7Q|1|K|U|1304

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 0

eS31

Chain 9

uS14

Chain WW

uS19