HL_6R84_027

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6R84|1|1|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R84_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.5579

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6R84|1|1|C|1239
6R84|1|1|A|1240
6R84|1|1|U|1241
6R84|1|1|G|1242
6R84|1|1|G|1243
6R84|1|1|A|1244
6R84|1|1|A|1245
6R84|1|1|G|1246
6R84|1|1|U|1247
6R84|1|1|C|1248
6R84|1|1|G|1249

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L12-A