HL_6R87_015
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 6R87|1|1|U|689, 6R87|1|1|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R87_015 not in the Motif Atlas
- Homologous match to HL_8C3A_015
- Geometric discrepancy: 0.1629
- The information below is about HL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6R87|1|1|G|686
6R87|1|1|U|687
6R87|1|1|G|688
6R87|1|1|U|689
6R87|1|1|A|690
6R87|1|1|A|691
6R87|1|1|A|692
6R87|1|1|A|693
6R87|1|1|C|694
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L26-A
- Chain p
- 60S ribosomal protein L15-A
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