HL_6R87_020

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6R87|1|1|U|879, 6R87|1|1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0988

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6R87|1|1|A|876
6R87|1|1|C|877
6R87|1|1|G|878
6R87|1|1|U|879
6R87|1|1|G|880
6R87|1|1|C|881
6R87|1|1|A|882
6R87|1|1|A|883
6R87|1|1|A|884
6R87|1|1|U|885

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L17-A

Chain F

60S ribosomal protein L3

Chain l

60S ribosomal protein L37-A