HL_6R87_028

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3482

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6R87|1|1|U|1267
6R87|1|1|G|1268
6R87|1|1|U|1269
6R87|1|1|A|1270
6R87|1|1|A|1271
6R87|1|1|C|1272
6R87|1|1|A|1273
6R87|1|1|A|1274

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L12-A