HL_6R87_050

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6R87|1|1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.103

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6R87|1|1|U|2292
6R87|1|1|C|2293
6R87|1|1|U|2294
6R87|1|1|A|2295
6R87|1|1|A|2296
6R87|1|1|U|2297
6R87|1|1|U|2298
6R87|1|1|A|2299
6R87|1|1|G|2300

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

Protein VMS1,Vms1,Protein VMS1,Vms1

Chain x

60S ribosomal protein L23-A