HL_6R87_052

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUUCGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_052 not in the Motif Atlas

Geometric match to HL_5AOX_001

Geometric discrepancy: 0.355

The information below is about HL_5AOX_001

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

6R87|1|1|G|2469
6R87|1|1|C|2470
6R87|1|1|U|2471
6R87|1|1|U|2472
6R87|1|1|C|2473
6R87|1|1|G|2474
6R87|1|1|G|2475
6R87|1|1|C|2476

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L1-A