HL_6RBD_019

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBD_019 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2428

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6RBD|1|2|A|829
6RBD|1|2|U|830
6RBD|1|2|U|831
6RBD|1|2|U|832
6RBD|1|2|U|833
6RBD|1|2|G|834
6RBD|1|2|U|835
6RBD|1|2|U|836
6RBD|1|2|G|837
6RBD|1|2|G|838
6RBD|1|2|U|839
6RBD|1|2|U|840
6RBD|1|2|U|841
6RBD|1|2|C|842
6RBD|1|2|U|843

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain L

40S ribosomal protein S11-A