HL_6RBD_029

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6RBD|1|2|U|1314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBD_029 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2377

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6RBD|1|2|C|1309
6RBD|1|2|U|1310
6RBD|1|2|U|1311
6RBD|1|2|A|1312
6RBD|1|2|A|1313
6RBD|1|2|U|1314
6RBD|1|2|U|1315
6RBD|1|2|G|1316

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17-A