HL_6RBE_022

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

6RBE|1|2|U|1004

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBE_022 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.2222

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6RBE|1|2|G|997
6RBE|1|2|A|998
6RBE|1|2|U|999
6RBE|1|2|C|1000
6RBE|1|2|A|1001
6RBE|1|2|G|1002
6RBE|1|2|A|1003
6RBE|1|2|U|1004
6RBE|1|2|A|1005
6RBE|1|2|C|1006
6RBE|1|2|C|1007

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14-A