HL_6RI5_027

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6RI5|1|A|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RI5_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.2597

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6RI5|1|A|C|1239
6RI5|1|A|A|1240
6RI5|1|A|U|1241
6RI5|1|A|G|1242
6RI5|1|A|G|1243
6RI5|1|A|A|1244
6RI5|1|A|A|1245
6RI5|1|A|G|1246
6RI5|1|A|U|1247
6RI5|1|A|C|1248
6RI5|1|A|G|1249

Current chains

Chain A

25S RNA

Nearby chains