HL_6RI5_061

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6RI5|1|A|U|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RI5_061 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.246

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6RI5|1|A|C|2840
6RI5|1|A|G|2841
6RI5|1|A|U|2842
6RI5|1|A|U|2843
6RI5|1|A|C|2844
6RI5|1|A|A|2845
6RI5|1|A|U|2846
6RI5|1|A|A|2847
6RI5|1|A|G|2848

Current chains

Chain A

25S RNA

Nearby chains

Chain q

60S ribosomal protein L10

Chain t

Ubiquitin-60S ribosomal protein L40