HL_6RM3_016

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6RM3|1|L50|A|639, 6RM3|1|L50|G|642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_016 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1714

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6RM3|1|L50|G|636
6RM3|1|L50|C|637
6RM3|1|L50|G|638
6RM3|1|L50|A|639
6RM3|1|L50|A|640
6RM3|1|L50|A|641
6RM3|1|L50|G|642
6RM3|1|L50|A|643
6RM3|1|L50|C|644

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LA0

uL2

Chain LG0

eL8

Chain LJJ

eL37

Chain LN0

eL15