HL_6RM3_031

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCAUCAG

Length

8 nucleotides

Bulged bases

6RM3|1|L50|C|1383, 6RM3|1|L50|U|1385, 6RM3|1|L50|A|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_031 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1995

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6RM3|1|L50|C|1381
6RM3|1|L50|G|1382
6RM3|1|L50|C|1383
6RM3|1|L50|A|1384
6RM3|1|L50|U|1385
6RM3|1|L50|C|1386
6RM3|1|L50|A|1387
6RM3|1|L50|G|1388

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LC0

uL4

Chain LJJ

eL37

Chain LLL

eL39

Chain LNN

MDF2

Chain LP0

uL22